muon-tutorials documentation

Tutorials

  • Single-cell RNA-seq and ATAC-seq integration
    • Processing gene expression of 10k PBMCs
    • Processing chromatin accessibility of 10k PBMCs
    • Integrating gene expression and chromatin accessibility of 10k PBMCs
    • Processing individual modalities and multimodal integration of 3k brain cells
  • CITE-seq integration
    • Processing and integrating 5k PBMCs CITE-seq data
    • CITE-seq data integration with weighted nearest neighbours
  • Trimodal single-cell omics
    • Processing and integrating PBMC TEA-seq data
  • MEFISTO models
    • Identifying temporal variation in EvoDevo data with MEFISTO
    • MEFISTO application to longitudinal microbiome data
    • MEFISTO application to spatial transcriptomics
  • Analysing CLL data
Theme by the Executable Book Project
  • .rst

muon tutorials

muon tutorials#

Tutorials

  • Single-cell RNA-seq and ATAC-seq integration
  • CITE-seq integration
  • Trimodal single-cell omics
  • MEFISTO models
  • Analysing CLL data

muon documentation can be found here.

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Single-cell RNA-seq and ATAC-seq integration

By Danila Bredikhin
© Copyright 2020 – 2022, Danila Bredikhin et al..