CITE-seq integration#

CITE-seq is a method for cellular indexing of transcriptomes and epitopes by sequencing. CITE-seq datasets comprise transcriptome-wide measurements for single cells (gene expression) as well as surface protein level information, typically for a few dozens of proteins. The method is described in Stoeckius et al., 2017 and also on the cite-seq.com website.

These notebooks cover different CITE-seq datasets: